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Figure 2 | BMC Bioinformatics

Figure 2

From: Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

Figure 2

A real example of HSP found by PSI-BLAST. We define that MYSKILL (assuming that the window size is 7) is a similar peptide of MYKKILY and we treat it as an extended sequence feature of the query protein. The similarity level of MYSKILL and MYKKILY is 5 since there are five interchangeable residue pairs within that window. We can generate multiple similar peptides from protein gi|2622094 (Sbjct) for the query protein.

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