Table 1 Pharmspresso ontology examples.
CATEGORY TYPE | |
|---|---|
Biological entity | Example words/phrases |
Cell or cell group | germ line cells, intenstines, sensory neurons |
Cellular component* | axons, integrins, mitochondrial membrane |
Disease | stroke, chronic leukemia, tuberculoma |
Drug | acebutolol, mechlorethamine, tartaric acid |
Gene | ABCB1, CYP2C9, coagulation factor V |
Organism | mice, rat, xenopus laevis |
Polymorphism | T168N, 1039G-A, 236Arg->Lys |
Relationships between entities | Example words/phrases |
Action | assists, acomplishes, recognizes |
Association | associates, binds, interacts |
Biological Process* | acetylated, matures, reactivations |
Characterization | has, contains, displays, includes, lacks |
Comparison | correlates, differs, equally, matches |
Effect | accumulates, aggregates, causes |