Table 7 Comparison with the state-of-the-art methods for multi-class remote fold recognition
From: Efficient use of unlabeled data for protein sequence classification: a comparative study
Method | Error | Top-5 Error | Balanced Error | Top-5 Balanced Error | F1 | Top-5 F1 |
|---|---|---|---|---|---|---|
mismatch (full seq.) | 50.49 | 22.31 | 76.44 | 38.61 | 24.96 | 65.58 |
triple (full seq.) | 50.81 | 17.92 | 71.95 | 27.80 | 28.92 | 73.93 |
mismatch (region) | 44.79 | 13.36 | 67.26 | 25.40 | 33.17 | 77.45 |
triple (region) | 36.81 | 10.91 | 52.58 | 20.07 | 49.69 | 81.26 |
profile(5,7.5) | 45.11 | 15.80 | 71.27 | 31.55 | 32.34 | 75.68 |
profile(5,7.5)† | 46.30 | 14.50 | 62.80 | 23.50 | - | - |