Table 8 The number of neighbors (mean/median/maximum) and the number of observed features with and without clustering for the remote fold recognition task
From: Efficient use of unlabeled data for protein sequence classification: a comparative study
Method | Without Clustering | With Clustering | ||
|---|---|---|---|---|
# neighbors | # features | # neighbors | # features | |
full seq. | 135/99/490 | 192,378,952 | 64/41/356 | 120,990,413 |
region | 64/41/356 | 34,807,209 | 50/26/352 | 28,738,521 |
no tails (full seq.) | 75/17/402 | 57,575,176 | 23/11/325 | 29,649,870 |
max. length (full seq.) | 70/16/431 | 39,915,003 | 22/12/279 | 14,634,511 |