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Table 1 Example annotation in the PRO association file (PAF).

From: TGF-beta signaling proteins and the Protein Ontology

PRO_ID Object_term Qual Relation Ontology_ID Ontology_term Ev.Source (PMID) DB_ID (UniProt) Modified_residue, MOD_ID
PRO:000000535 c-myc isoform 1 acetylated 1   has_function GO:0003700 transcription factor activity 16126174 P01106-1 Lys-143/Lys-157/Lys-275/Lys-317/Lys-323/Lys-371, MOD:00394
PRO:000000535 c-myc isoform 1 acetylated 1   located_in GO:0005634 nucleus 16126174 P01106-1 Lys-143/Lys-157/Lys-275/Lys-317/Lys-323/Lys-371, MOD:00394
PRO:000000535 c-myc isoform 1 acetylated 1   part_of GO:0005667 transcription factor complex 16126174 P01106-1 Lys-143/Lys-157/Lys-275/Lys-317/Lys-323/Lys-371, MOD:00394
PRO:000000535 c-myc isoform 1 acetylated 1   has_modification MOD:00394 acetylated residue 16126174 P01106-1 Lys-143/Lys-157/Lys-275/Lys-317/Lys-323/Lys-371, MOD:00394
PRO:000000536 c-myc isoform 1 glycosylated 1   has_function GO:0003700 transcription factor activity 11904304 P01106-1 Thr-58, MOD:00806
PRO:000000536 c-myc isoform 1 glycosylated 1   participates_in GO:0006357 regulation of transcription from RNA polymerase II promoter 11904304 P01106-1 Thr-58, MOD:00806
PRO:000000536 c-myc isoform 1 glycosylated 1   has_modification MOD:00806 O-(N-acetylaminoglucosyl)-L-threonine 11904304 P01106-1 Thr-58, MOD:00806
PRO:000000537 c-myc isoform 1 phosphorylated 1   has_function GO:0003700 transcription factor activity 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   located_in GO:0005634 nucleus 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   part_of GO:0005667 transcription factor complex 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   participates_in GO:0006357 regulation of transcription from RNA polymerase II promoter 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   participates_in GO:0008283 cell proliferation 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   participates_in GO:0055072 iron ion homeostasis 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000537 c-myc isoform 1 phosphorylated 1   has_modification MOD:00046 O-phospho-L-serine 11018017 P01108-1 Ser-62, MOD:00046
PRO:000000538 c-myc isoform 1 phosphorylated 2 NOT has_function GO:0003700 transcription factor activity 7623799 P01106-1 Ser-62, MOD:00046|Thr-58, MOD:00047
PRO:000000538 c-myc isoform 1 phosphorylated 2   located_in GO:0005634 nucleus 14563837 P01108-1 Ser-62, MOD:00046|Thr-58, MOD:00047
PRO:000000538 c-myc isoform 1 phosphorylated 2   has_modification MOD:00046 O-phospho-L-serine 14563837 P01108-1 Ser-62, MOD:00046|Thr-58, MOD:00047
PRO:000000538 c-myc isoform 1 phosphorylated 2   has_modification MOD:00047 O-phospho-L-threonine 14563837 P01108-1 Ser-62, MOD:00046|Thr-58, MOD:00047
PRO:000000539 c-myc isoform 1 phosphorylated 3   located_in GO:0005634 nucleus 12676581 P01106-1 Ser-62/Ser-71, MOD:00046
PRO:000000539 c-myc isoform 1 phosphorylated 3   participates_in GO:0045766 positive regulation of angiogenesis 12676581 P01106-1 Ser-62/Ser-71, MOD:00046
PRO:000000539 c-myc isoform 1 phosphorylated 3   has_modification MOD:00046 O-phospho-L-serine 12676581 P01106-1 Ser-62/Ser-71, MOD:00046
PRO:000000480 smad6 isoform 2 NOT has_part Pfam:PF03165 MH1 domain 11284962 O43541-2  
  1. Selected columns are shown. Note that the last two columns are a tuple that define the sub-type of the class.