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Table 1 Ligand descriptors

From: A chemogenomics view on protein-ligand spaces

Abbreviation

Description

MW

molecular weight

Sv

sum of atomic van der Waals volumes

Se

sum of atomic Sanderson electronegativites

Sp

sum of atomic polarizabilities

Mv

mean atomic van der Waals volume

Me

mean atomic Sanderson electronegativity

nAT

number of atoms

nSK

number of non-hydrogen atoms

nBT

number of bonds

nBO

number of non-hydrogen bonds

nBM

number of multiple bonds

ARR

aromatic ratio

nCIC

number of rings

RBN

number of rotatable bonds

RBF

rotatable bond fraction

nDB

number of double bonds

nAB

number of aromatic bonds

nC

number of carbon atoms

nN

number of nitrogen atoms

nO

number of oxygen atoms

nX

number of halogens

nBnz

number of benzene rings

nCar

number of aromatic carbon atoms

nRCONH2

number of primary amides

nROH

number of aliphatic hydroxyl groups

nArOH

number of aromatic hydroxyl groups

nHDon

number of hydrogen bond donors

nHAcc

number of hydrogen bond acceptors

Ui

unsaturation index

Hy

hydrophilic factor

AMR

Ghose-Crippen molar refractability

TPSA(Tot)

topological polar surface area

ALOGP

Ghose-Crippen octanol-water partition coefficient

LAI

Lipinski alert index