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Figure 2 | BMC Bioinformatics

Figure 2

From: Visualising biological data: a semantic approach to tool and database integration

Figure 2

SMART conduit listing. The Python code listing of the conduit for providing Utopia with the analysis functionality of the SMART (Simple Modular Architecture Research Tool [29]) web service. The code defines a single Python class, with a description method that provides terms from an ontology defining the inputs, function and outputs of the conduit, as well as a human readable comment. The remainder of the class is taken up by the invoke method that extracts data from the semantic model, accesses the SMART web service, decodes the results, and finally modifies the semantic model before returning.

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