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Table 1 Statistics of UTR sequences collected in UTRminer.

From: Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining

 

5'UTR

3'UTR

 

A

B

C

D

E

F

G

H

Species

  

min

max

  

min

max

H. sapiens

728

299

1

10

728

707

1

66

M. musculus

504

164

1

6

505

491

1

39

D. melanogaster

242

116

1

5

243

239

1

11

R. norvegicus

199

49

1

3

202

194

1

39

B. taurus

121

18

1

5

121

111

1

19

D. rerio

73

32

1

3

73

70

1

29

S. scrofa

28

3

1

1

29

28

1

20

C. elegans

24

2

2

3

23

21

1

6

G. gallus

16

6

1

3

19

18

1

9

X. tropicalis

9

1

1

1

9

8

1

8

 

1944

690

  

1952

1888

  
  1. The table reports, for the 5'- and 3'-UTR datasets of each species: i) the number of pre-processed sequences with the UTRscan software (columns A and E); the number of sequences bringing at least one regulatory RNA motif (columns B and F); the lowest (columns C and G) and highest (columns D and H) number of cis-regulatory motif occurrences found along a same UTR sequence.
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BMC Bioinformatics

ISSN: 1471-2105

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