Table 2 Statistics of types of regulatory RNA motifs in UTRminer.
From: Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining
Location (5' UTR) | Â |
|---|---|
Regulatory motifs | Occurrences |
Upstream Open Reading Frame (uORF) | 437 |
Internal Ribosome Entry Site (IRES) | 324 |
Terminal Oligopyrimidine Tract (TOP) | 48 |
UNR binding site (UNR-bs) | 17 |
Iron Responsive Element (IRE) | 8 |
S12 mitochondrial protein 5'UTR translation control element (RPMS12_TCE) | 3 |
SXL binding site (SLX-bs) | 2 |
Mos polyadenylation response element (Mos-PRE) | 2 |
Location (3' UTR) | Â |
Upstream Open Reading Frame (uORF) | 1693 |
Polyadenylation Signal (PAS) | 1361 |
Internal Ribosome Entry Site (IRES) | 444 |
K-Box (KB) | 177 |
SXL binding site (SLX-bs) | 131 |
Brd-Box (Brd) | 128 |
UNR binding sites (UNR-bs) | 123 |
GY-Box (GY) | 114 |
Mos polyadenylation response element (Mos-PRE) | 54 |
Cytoplasmic polyadenylation element (CPE) | 46 |
Alcohol dehydrogenase 3'UTR downregulation control element (ADH_DRE) | 32 |
Selenocysteine Insertion Sequence – type 1 (SECIS1) | 13 |
AU-rich class-2 Element (ARE2) | 3 |
Insulin 3'UTR stability element (INS_SCE) | 3 |
Bruno 3'UTR responsive element (BRE) | 2 |
15-Lipoxygenase Differentiation Control Element (15-LOX-DICE) | 2 |
Glusose transporter type-1 3'UTR cis-acting element (GLUT1) | 1 |
Iron Responsive Element (IRE) | 1 |