Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining

BMC Bioinformatics

Table 7 UNR-bs and SLX-bs FPs in UTRminer 3' UTRs.

*INIT*	PL	*Frequent Pattern*							%
24	2	UNR-bs	SXL-bs						0.82%
87	3	UNR-bs	SXL-bs				uORF		0.82%
79	3	UNR-bs	SXL-bs					PAS	0.56%
156	4	UNR-bs	SXL-bs				uORF	PAS	0.56%
195	4	UNR-bs	SXL-bs	KB			uORF		0.26%
92	3	UNR-bs	SXL-bs			Mos-PRE			0.26%
165	4	UNR-bs	SXL-bs			Mos-PRE	uORF		0.26%
161	4	UNR-bs	SXL-bs	KB				PAS	0.2%
211	5	UNR-bs	SXL-bs	KB			uORF	PAS	0.2%
53	3	UNR-bs	SXL-bs		Brd				0.2%
138	4	UNR-bs	SXL-bs		Brd		uORF		0.2%

The order in which RNA target sites are listed in table rows is neither indicative of the order of the target sites along the UTR sequences, nor indicative of the multiple target site occurrence. This information can be retrieved in the "Frequent Patterns" Section of UTRminer. PL = Pattern level, % = percentage of sequences supporting the FSP.

ISSN: 1471-2105