RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences

BMC Bioinformatics

Table 1 Quantitative report of the PPNEMA updating procedure

Number of selected GenBank entries	884
Number of PPNEMA Groups considered	245
Number of TP in Normal Search	1294
Number of FN in Normal Search	184
Number of TP after Scan-RegExpBlasting	155
Number of True Negative (TN)	29

Data refer to application of entire RegExpBlasting procedure, as described in Figure 2, with following fixed parameters: minl = 60, w = 20, step = 5 and cut-off = 0.85.

ISSN: 1471-2105