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Figure 2 | BMC Bioinformatics

Figure 2

From: DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes

Figure 2

MOFEXT and GeneMerge analysis of the 300 base pair upstream region of the matrilin-1 and the FABP4 genes. We downloaded the 500 base pair promoter region of the matrilin-1 (A1) and FABP4 (B1) genes. We used the last 300 base pair of these sequences as a query in the MOFEXT search with the following parameters: wordsize: 8, cutoff: 70 and the 1000 base pair E subset (A2 and B2). After the MOFEXT search we got 30548 (MATN1) and 23463 (FABP4) hits. We used the score range 151-40 (MATN1) and 105-40 (FABP4) for the GeneMerge analysis (A3 and B3). The genes in the GO term "Extracellular matrix (sensu metazoan)" are listed in the panel A4. Some genes in the GO term "positive regulation of transcription from RNA polymerase II promoter" are listed in the panel B4.

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BMC Bioinformatics

ISSN: 1471-2105

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