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Table 1 Node attribute description

From: From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways

Node attribute name Description
UniProtId UniProt identifier
entrezGeneId Entrez Gene identifier
mutagenesis List of the mutagenesis information:
contains the amino acid exchange, the sequence position and the textual phenotypic description from UniProt
polymorphism List of the natural variant/polymorphism information:
contains the amino acid exchange, the sequence position, the textual phenotypic description from UniProt and if available a MIM id and the textual description of the disease association; if at the same position mutagenesis data is also available, this data is listed as a sub-list of the polymorphism
OMIM Disease name associated with the natural variant
DbSNP dbSNP identifier
GObiolProcess List of GO biological process terms that are associated to the natural variant or mutant
GObiolProcessId List of GO biological process identifiers that are associated to the natural variant or mutant
GOmolFunction List of GO molecular function terms that are associated to the natural variant or mutant
GOmolFunctionId List of GO molecular function identifiers that are associated to the natural variant or mutant
GOcellComponent List of GO cellular component terms that are associated to the natural variant or mutant
GOcellComponentId List of GO cellular component identifiers that are associated to the natural variant or mutant
extUniProtIds List of UniProt identifiers that are associated to the natural variant or mutant
mutPolyFlag Required for the visual styles
1: only mutagenesis information available
2: only polymorphism information available
3: mutagenesis and polymorphism information available but not at the same position
4: mutagenesis and polymorphism information available at the same position