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Table 4 Concept classes and note sections by affirmed concept attributes

From: Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease

Concept Class Concepts Ambiguous Relevant Granular (atomic) Granular (clinical inference)
Diagnoses 249 46 (18%) 249 (100%) 245 (98%) 192 (77%)
Assessment 68 (27%) 13 (5%) 68 (27%) 67 (27%) 53 (21%)
Problem Lists 56 (22%) 14 (6%) 56 (22%) 55 (22%) 40 (16%)
Signs and Symptoms 395 283 (72%) 391 (99%) 257 (65%) 0
HPI 91 (23%) 58 (15%) 89 (23%) 66(17%)  
Physical Examination 81(21%) 65 (16%) 80 20%) 27 (7%)  
Procedures 239 116 (49%) 226 (95%) 207 (87%) 0
HCM 55 (23%) 29 (12%) 55 (23%) 55 (23%)  
Assessment 34 (14%) 18 (8%) 33 (14%) 27 (11%)  
Medications 163 18 (11%) 157 (96%) 163 (100%) 133 (82%)
Medication 64 (39%) 4 (2%) 61 (37%) 64 (39%) 48 (29%)
Assessment 37 (27%) 5 (3%) 36 (22%) 37 (27%) 30 (18%)
Total 1046 463 (44%) 1023 (98%) 872 (83%) 325 (31%)
  1. HPI = History of presenting illness, HCM = Health Care Maintenance