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Table 4 Concept classes and note sections by affirmed concept attributes

From: Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease

Concept Class

Concepts

Ambiguous

Relevant

Granular (atomic)

Granular (clinical inference)

Diagnoses

249

46 (18%)

249 (100%)

245 (98%)

192 (77%)

Assessment

68 (27%)

13 (5%)

68 (27%)

67 (27%)

53 (21%)

Problem Lists

56 (22%)

14 (6%)

56 (22%)

55 (22%)

40 (16%)

Signs and Symptoms

395

283 (72%)

391 (99%)

257 (65%)

0

HPI

91 (23%)

58 (15%)

89 (23%)

66(17%)

 

Physical Examination

81(21%)

65 (16%)

80 20%)

27 (7%)

 

Procedures

239

116 (49%)

226 (95%)

207 (87%)

0

HCM

55 (23%)

29 (12%)

55 (23%)

55 (23%)

 

Assessment

34 (14%)

18 (8%)

33 (14%)

27 (11%)

 

Medications

163

18 (11%)

157 (96%)

163 (100%)

133 (82%)

Medication

64 (39%)

4 (2%)

61 (37%)

64 (39%)

48 (29%)

Assessment

37 (27%)

5 (3%)

36 (22%)

37 (27%)

30 (18%)

Total

1046

463 (44%)

1023 (98%)

872 (83%)

325 (31%)

  1. HPI = History of presenting illness, HCM = Health Care Maintenance