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Table 4 Estimated free energy parameters

From: Free energy estimation of short DNA duplex hybridizations

ID Doublet [kcal/mol] Counts ID Doublet [kcal/mol] Counts
1. AA/TT -0.838948 84 6. CC/GG -1.698997 74
2. AC/TG -1.394988 102 7. CG/GC -0.967002 106
3. AG/TC -1.323547 102 8. GA/CT -0.938327 101
4. AT/TA -0.375235 130 9. GC/CG -0.711466 126
5. CA/GT -1.406794 95 10. TA/AT -0.144092 136
ID Triplet [kcal/mol] Counts ID Triplet [kcal/mol] Counts
1. AAA/TTT -0.844597 10 17. CAG/GTC -1.625284 23
2. AAC/TTG -1.841904 19 18. CCA/GGT -1.568813 18
3. AAG/TTC -1.201194 17 19. CCC/GGG -2.396507 17
4. AAT/TTA -0.991596 19 20. CCG/GGC -1.888906 22
5. ACA/TGT -1.121939 20 21. CGA/GCT -1.668273 19
6. ACC/TGG -1.793995 23 22. CGC/GCG -2.195726 23
7. ACG/TGC -1.615048 30 23. CTA/GAT -0.871636 40
8. ACT/TGA -0.781693 23 24. CTC/GAG -1.198450 16
9. AGA/TCT -1.103536 15 25. GAA/CTT -1.317278 18
10. AGC/TCG -1.528461 36 26. GAC/CTG -1.498999 29
11. AGG/TCC -1.323278 18 27. GCA/CGT -1.454430 21
12. ATA/TAT -0.562379 46 28. GCC/CGG -1.973081 24
13. ATC/TAG -1.157521 29 29. GGA/CCT -1.696158 20
14. ATG/TAC -1.263601 26 30. GTA/CAT -1.158422 32
15. CAA/GTT -0.988509 16 31. TAA/ATT -0.519499 27
16. CAC/GTG -2.088824 17 32. TCA/AGT -1.042342 19
  1. Estimated free energy parameters for unique DNA NN doublets and triplets and their corresponding counts of appearance in the perfect match data set. All parameters have been estimated using experimental values measured at 37°C and 1 M sodium concentration.