Skip to main content

Table 4 Estimated free energy parameters

From: Free energy estimation of short DNA duplex hybridizations

ID

Doublet

[kcal/mol]

Counts

ID

Doublet

[kcal/mol]

Counts

1.

AA/TT

-0.838948

84

6.

CC/GG

-1.698997

74

2.

AC/TG

-1.394988

102

7.

CG/GC

-0.967002

106

3.

AG/TC

-1.323547

102

8.

GA/CT

-0.938327

101

4.

AT/TA

-0.375235

130

9.

GC/CG

-0.711466

126

5.

CA/GT

-1.406794

95

10.

TA/AT

-0.144092

136

ID

Triplet

[kcal/mol]

Counts

ID

Triplet

[kcal/mol]

Counts

1.

AAA/TTT

-0.844597

10

17.

CAG/GTC

-1.625284

23

2.

AAC/TTG

-1.841904

19

18.

CCA/GGT

-1.568813

18

3.

AAG/TTC

-1.201194

17

19.

CCC/GGG

-2.396507

17

4.

AAT/TTA

-0.991596

19

20.

CCG/GGC

-1.888906

22

5.

ACA/TGT

-1.121939

20

21.

CGA/GCT

-1.668273

19

6.

ACC/TGG

-1.793995

23

22.

CGC/GCG

-2.195726

23

7.

ACG/TGC

-1.615048

30

23.

CTA/GAT

-0.871636

40

8.

ACT/TGA

-0.781693

23

24.

CTC/GAG

-1.198450

16

9.

AGA/TCT

-1.103536

15

25.

GAA/CTT

-1.317278

18

10.

AGC/TCG

-1.528461

36

26.

GAC/CTG

-1.498999

29

11.

AGG/TCC

-1.323278

18

27.

GCA/CGT

-1.454430

21

12.

ATA/TAT

-0.562379

46

28.

GCC/CGG

-1.973081

24

13.

ATC/TAG

-1.157521

29

29.

GGA/CCT

-1.696158

20

14.

ATG/TAC

-1.263601

26

30.

GTA/CAT

-1.158422

32

15.

CAA/GTT

-0.988509

16

31.

TAA/ATT

-0.519499

27

16.

CAC/GTG

-2.088824

17

32.

TCA/AGT

-1.042342

19

  1. Estimated free energy parameters for unique DNA NN doublets and triplets and their corresponding counts of appearance in the perfect match data set. All parameters have been estimated using experimental values measured at 37°C and 1 M sodium concentration.