Table 4 Isoform changes in gene expression significantly associated with patient outcomes in both validation datasets.
From: SplicerAV: a tool for mining microarray expression data for changes in RNA processing
SplicerAV Predictions | Association with Survival | |||
|---|---|---|---|---|
Gene Symbol†| Isoform Probeset | Hypothesis | Miller | Pawitan |
ARHGEF7 | 202548_s_at | DOWN | *0.009 | *0.008 |
DPP7 | 241973_x_at | DOWN | *0.001 | *0.007 |
EIF4E2 | 209393_s_at | UP | **0.002 | *0.003 |
MAPKAP1 | 222426_at | DOWN | *0.019 | *0.003 |
SLC28A10 | 230448_at | UP | *0.007 | 0.032 |
PDXK | 202671_s_at | UP | **0.001 | 0.025 |
POLI | 238992_at | UP | 0.037 | 0.052 |
SFPQ | 201585_s_at | UP | 0.062 | 0.041 |
SIVA1 | 203489_at | UP | *0.005 | 0.075 |
SSU72 | 223051_at | UP | *0.018 | *0.007 |
TFDP2 | 203588_s_at | UP | 0.054 | *0.008 |
TIMP2 | 231579_s_at | DOWN | **0.001 | 0.056 |
TncRNA | 234989_at | UP | **0.001 | 0.034 |
WDFY3 | 212606_at | UP | 0.049 | *0.010 |
WDR26 | 224897_at | UP | **0.001 | 0.049 |