Skip to main content
Figure 1 | BMC Bioinformatics

Figure 1

From: The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays

Figure 1

IronChip analysis work flow. (A) Flow chart of ICEP data processing and evaluation. Data evaluation with ICEP is organized into three functional modules: Single feature, EST and transcript evaluation. (B) In our application example, hybridized microarrays were scanned on a GenePix 4000B Microarray Scanner (Axon Instruments, Union City, CA, USA) and processed (feature background subtraction and normalization) by the ChipSkipper software [8]. ICEP uses these output files (generic tab-delimited text tables containing the normalized signal intensity and background data) for further analysis.

Back to article page