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Table 5 ESTs grouping rules (2 ESTs grouping)

From: The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays

EST 1

EST 2

Rel. Error

Transcript

DS flag

Regulation

DS flag

Regulation

 

Flag

Value

Regulation

absent

N.A.

absent

N.A.

 

absent

0

NONE

  

non regulated

NONE

 

non reliable

0

NONE

  

non reliable

N.A.

 

non reliable

0

NONE

  

TRUE

UP/DOWN

 

non reliable

Average

NONE

non regulated

NONE

non regulated

NONE

 

non regulated

Average

NONE

  

non reliable

N.A.

 

non reliable

0

NONE

  

TRUE

UP/DOWN

 

non reliable

Average

NONE

non reliable

N.A.

non reliable

N.A.

 

non reliable

0

NONE

  

TRUE

UP/DOWN

 

non reliable

Average

NONE

TRUE

UP

TRUE

UP

≥15

non reliable

Average

UP

   

UP

≤15

TRUE

Average

UP

  

TRUE

DOWN

 

non reliable

Average

NONE

TRUE

DOWN

TRUE

DOWN

≥15

non reliable

Average

DOWN

   

DOWN

≤15

TRUE

Average

DOWN

   

UP

 

non reliable

Average

NONE

  1. The EST grouping rules represent rules for a decision-tree based algorithm to summarize expression data from several ESTs, representing one transcript. These are contained within a core table.