Table 2 Shine-Dalgarno RBS Motifs in Prodigal
From: Prodigal: prokaryotic gene recognition and translation initiation site identification
Bin # | RBS Motif | RBS Spacer |
|---|---|---|
0 | None | None |
1 | GGA, GAG, AGG | 3-4 bp |
2 | GGA, GAG, AGG, AGxAG, GGxGG | 13-15 bp |
3 | AGGA, GGAG, GAGG, AGxAGG, AGGxGG | 13-15 bp |
4 | AGxAG | 11-12 bp |
5 | AGxAG | 3-4 bp |
6 | GGA, GAG, AGG | 11-12 bp |
7 | GGxGG | 11-12 bp |
8 | GGxGG | 3-4 bp |
9 | AGxAG | 5-10 bp |
10 | AGGAG, GGAGG, AGGAGG | 13-15 bp |
11 | AGGA, GGAG, GAGG | 3-4 bp |
12 | AGGA, GGAG, GAGG | 11-12 bp |
13 | GGA, GAG, AGG | 5-10 bp |
14 | GGxGG | 5-10 bp |
15 | AGGA | 5-10 bp |
16 | GGAG, GAGG | 5-10 bp |
17 | AGxAGG, AGGxGG | 11-12 bp |
18 | AGxAGG, AGGxGG | 3-4 bp |
19 | AGxAGG, AGGxGG | 5-10 bp |
20 | AGGAG, GGAGG | 11-12 bp |
21 | AGGAG | 3-4 bp |
22 | AGGAG | 5-10 bp |
23 | GGAGG | 3-4 bp |
24 | GGAGG | 5-10 bp |
25 | AGGAGG | 11-12 bp |
26 | AGGAGG | 3-4 bp |
27 | AGGAGG | 5-10 bp |