Table 5 Number of Genes Predicted By Each Method
From: Prodigal: prokaryotic gene recognition and translation initiation site identification
Organism | Genbank | EasyGene 1.2 | Prodigal 1.20 | GenemarkHMM 2.6 | Glimmer 3.02 | MED 2.0 |
|---|---|---|---|---|---|---|
Escherichia coli K12 | 4321 (1.00) | 4099 (0.95) | 4305 (1.00) | 4378 (1.01) | 4476 (1.04) | 4811 (1.11) |
Halobacterium salinarum | 2110 (1.00) | 2097 (0.99) | 2101 (1.00) | 2085 (0.99) | 2141 (1.01) | 2385 (1.13) |
Natronomonas pharaonis | 2661 (1.00) | 2587 (0.97) | 2678 (1.01) | 2685 (1.01) | 2720 (1.02) | 3111 (1.17) |
Bacillus subtilis | 4177 (1.00) | 4019 (0.96) | 4224 (1.01) | 4354 (1.04) | 4429 (1.06) | 4601 (1.10) |
Aeropyrum pernix | 1700 (1.00) | 1686 (0.99) | 1717 (1.01) | 1738 (1.02) | 1789 (1.05) | 2419 (1.42) |
Synechocystis PCC6803 | 3172 (1.00) | 3089 (0.97) | 3306 (1.04) | 3462 (1.09) | 3677 (1.16) | 3778 (1.19) |
Pseudomonas aeruginosa | 5566 (1.00) | 5910 (1.06) | 5679 (1.02) | 5712 (1.03) | 5878 (1.06) | 6709 (1.21) |