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Table 1 List of SCOP superfamilies used in Datasets 1-4

From: SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale

Dataset name

SCOP superfamily ID

Size

Superfamily name

Dataset 1

46458

111

Globin-like

 

47473

126

EF-hand

 

49503

93

Cupredoxins

 

51445

161

(Trans)glycosidases

 

52833

178

Thioredoxin-like

Dataset 2

46458

111

Globin-like

 

47473

126

EF-hand

 

50494

99

Trypsin-like serine proteases

 

51905

100

FAD/NAD(P)-binding domain

 

54452

75

MHC antigen-recognition domain

 

57095

76

Scorpion toxin-like

Dataset 3

46458

111

Globin-like

 

47473

126

EF-hand

 

51735

305

NAD(P)-binding Rossmann-fold domains

 

51351

16

Triosephosphate isomerase (TIM)

 

51971

9

Nucleotide-binding domain

Dataset 4

47240

66

Ferritin-like

 

49899

118

Concanavalin A-like lectins/glucanases

 

50494

99

Trypsin-like serine proteases

 

50814

72

Lipocalins

 

51905

100

FAD/NAD(P)-binding domain

 

53383

92

PLP-dependent transferases

 

53933

13

Microbial ribonucleases

 

54236

94

Ubiquitin-like

  1. The size of the dataset denotes the number of sequences in ASTRAL-95 corresponding to domains of the superfamily.