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Table 2 Key features of the mtDNA-version of eCOMPAGT

From: eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics and genotype-phenotype association studies

Advantages

Disadvantages

Import of population data in EMPOP format

No automatic haplogroup assignment

Import of Sequencher/SeqScape mutation reports

 

Upload of phenotypes at any time

 

Comparison of double evaluations

 

History function for traceability

 

MySQL and ORACLE support

 

Export of several file formats:

 

   FASTA

 

   Network.exe

 

   mtdnaManager

 

   EMPOP

 

   binary matrix as a tab-delimited file

 

   Excel format with phenotypes

 

   Tab-delimited file for spreadsheets

 

Tumor mutations: Automatic detection of somatic mutations