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Table 1 Performance of various statistical potentials on models of CASP5-8 experiments.

From: New statistical potential for quality assessment of protein models and a survey of energy functions

Scoring function models only native included
  Average a Ranked 1 b Average c Raw average d Ranked 1 e
QMEAN6 2.87 85 1.71 3.26 113
QMEAN-all_atom 3.59 74 1.71 2.9 119
QMEAN-SSE_agree 3.74 62 3.72 9.62 39
QMEAN-ACC_agree 4.04 40 3.78 8.83 48
RF_CB_SRS_OD 4.16 61 2.08 3.6 110
RF_CB_OD 4.62 62 2.00 3.65 111
RF_HA_SRS 4.65 49 1.38 1.66 137
RF_CB_SRS 4.72 56 2.18 3.46 114
OPUS_CA 4.72 79 5.13 9.93 55
VSCORE-combined 4.79 53 2.20 3.79 117
QMEAN-pairwise 4.80 54 3.15 5.86 85
Rosetta 5.01 57 4.09 8.03 68
Dong-pair 5.01 58 6.32 14.41 4
RF_CB 5.06 52 2.46 4.31 106
VSCORE-pair 5.08 54 1.85 2.81 128
PROSA-combined 5.11 57 3.38 6.27 87
OPUS_PSP 5.39 54 2.99 4.11 118
RF_HA 5.44 62 2.78 4.37 112
DOPE 5.77 54 3.27 5.97 95
dFIRE 6.03 50 5.69 11.8 33
PROSA-pair 6.03 56 3.54 6.02 95
QMEAN-torsion 6.71 45 3.24 4.66 114
Shortle2006 6.85 35 1.79 2.54 129
Liang_geometric 6.88 44 2.48 3.94 114
QMEAN-solvation 7.32 33 6.27 10.87 54
Shortle2005 7.73 42 3.39 5.19 109
Floudas-CM 7.75 38 7.05 12.77 42
Floudas-Ca 7.79 33 8.36 16.01 10
NAMD 1000 8.06 24 4.96 8.56 78
Melo-ANOLEA 9.62 19 5.19 8.37 86
PC2CA 9.75 19 5.06 8.35 85
Melo-NL 9.99 14 5.85 9.45 80
NAMD 1 11.91 5 10.98 18.04 24
Random 9.72 13.9 10.1 10.1 8.3
  1. a The average rank (over 143 decoy sets) in the absence of native structures.
  2. b The number of sets when the best model was ranked as first, in the absence of native structures.
  3. c The average rank when native structures are present.
  4. d The average rank when native structures are present, calculated without compensation for the gap in ranking between experimental structure and first model (see text).
  5. e The number of sets when the best model was ranked as first when native structures are present.
  6. Expected random values were generated by picking a wining model from the decoy sets randomly. Average values over 1000 random trials are shown.