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Figure 3 | BMC Bioinformatics

Figure 3

From: miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

Figure 3

A schematic workflow of miRSel search by miRNA ID. After entering a complete or partial search key (e.g. a miRNA) (A) the user can select a subset of the matching miRNAs (B). Then, corresponding miRNA-target co-occurrences stored in the database are displayed in a tabular format (C). This table enables the navigation to miRNA or gene pages of primary databases (e.g. D = miRBase, E = Entrez Gene, PubMed abstracts that reference particular co-occurrences (F), or to the database sources for which the pair has been integrated (G). Also, details related to each miRNA-target pair e.g. all possible names for a given miRNA or protein in the literature and comparison results of other databases and sequence prediction can be displayed from the table (H). Finally, a miRNA target interaction graph (I) can be displayed that also enables the navigation to miRNA and gene pages (nodes) or PubMed abstracts (edges).

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BMC Bioinformatics

ISSN: 1471-2105

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