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Table 1 miRNA and gene/protein dictionaries

From: miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

    

Proteins/genes

Species

Mature (miR/miR*)

miRNA Stem-loop

Synonyms

Entities

Synonyms

Human

1026

162

43070

30120

473403

Mouse

767

133

32448

42130

460921

Rat

392

63

15662

39545

285483

  1. The identifiers and synonyms are extracted from different biological databases (such as miRBase, miRGen, HUGO, MGI, Entrez Gene, Swiss-Prot), including manually collected miRNA identifiers for human, mouse and rat from the literature. All dictionaries were processed to add frequently used synonym variants and to remove unspecific and inappropriate synonyms.