Skip to main content

Table 1 Alignment time comparison of various numbers of human mtDNA genomes (complete sequences)

From: MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data

  No. of sequences compared
Method 50 100 200 400
MISHIMA + MAFFT 00:01:05 00:02:23 00:12:59 01:38:09
MISHIMA + CLUSTAL W -max-depth = 1 00:00:43 00:02:06 00:06:05 00:34:19
CLUSTAL W 02:15:32 04:48:59 10:16:22 25:08:23
MUSCLE 00:44:29 01:28:12 02:08:44 -----
MAFFT 00:02:43 00:05:44 00:16:31 00:38:51
Nucleotide diversity 0.003 0.002 0.002 0.002