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Table 1 AUC values for distance matrices of Mismatch and PCD versus common sequence comparison algorithms

From: Physicochemical property distributions for accurate and rapid pairwise protein homology detection

 

SW

BLAST

Mismatch

(k= 4, m= 1)

D PC (PCD)

Fold

0.713

0.619

0.623

0.681

Superfamily

0.679

0.660

0.704

0.757

Family

0.820

0.737

0.784

0.792