TY - CHAP PY - 2002 DA - 2002// TI - Affymetrix Microarray Suite User Guide (version 5) BT - Tech. rep., Affymetrix Santa Clara ID - ref1 ER - TY - JOUR AU - Huber, W. AU - Heydebreck von, A. AU - Sultmann, H. AU - Poustka, A. AU - Vingron, M. PY - 2002 DA - 2002// TI - Variance stabilization applied to microarray data calibration and to the quantification of differential expression JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.suppl_1.S96 DO - 10.1093/bioinformatics/18.suppl_1.S96 ID - Huber2002 ER - TY - JOUR AU - Irizarry, R. AU - Hobbs, B. AU - Collin, F. AU - Beazer-Barclay, Y. AU - Antonellis, K. AU - Scherf, U. AU - Speed, T. PY - 2003 DA - 2003// TI - Exploration, normalization, and summaries of high density oligonucleotide array probe level data JO - Biostatistics VL - 4 UR - https://doi.org/10.1093/biostatistics/4.2.249 DO - 10.1093/biostatistics/4.2.249 ID - Irizarry2003 ER - TY - JOUR AU - Zhang, L. AU - Miles, M. F. AU - Aldape, K. D. PY - 2003 DA - 2003// TI - A model of molecular interactions on short oligonucleotide microarrays JO - Nature Biotechnology VL - 21 UR - https://doi.org/10.1038/nbt836 DO - 10.1038/nbt836 ID - Zhang2003 ER - TY - CHAP AU - Hubbell, E. AU - Liu, W. AU - Mei, R. PY - 2004 DA - 2004// TI - Supplemental data: robust estimators for expression analysis BT - Tech rep Affymetrix ID - Hubbell2004 ER - TY - JOUR AU - Wu, Z. AU - Irizarry, R. A. PY - 2005 DA - 2005// TI - Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays JO - Journal of Computational Biology VL - 12 UR - https://doi.org/10.1089/cmb.2005.12.882 DO - 10.1089/cmb.2005.12.882 ID - Wu2005 ER - TY - JOUR AU - Gautier, L. AU - Cope, L. AU - Bolstad, B. AU - Irizarry, R. PY - 2004 DA - 2004// TI - affy-analysis of Affymetrix GeneChip data at the probe level JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg405 DO - 10.1093/bioinformatics/btg405 ID - Gautier2004 ER - TY - JOUR AU - Naef, F. AU - Magnasco, M. O. PY - 2003 DA - 2003// TI - Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays JO - Physical Review E VL - 68 UR - https://doi.org/10.1103/PhysRevE.68.011906 DO - 10.1103/PhysRevE.68.011906 ID - Naef2003 ER - TY - JOUR AU - Binder, H. AU - Kirsten, T. AU - Loeffler, M. AU - Stadler, P. PY - 2004 DA - 2004// TI - Sensitivity of Microarray Oligonucleotide Probes: Variability and Effect of Base Composition JO - Journal of Physical Chemistry B VL - 108 UR - https://doi.org/10.1021/jp049593g DO - 10.1021/jp049593g ID - Binder2004 ER - TY - JOUR AU - Held, G. A. AU - Grinstein, G. AU - Tu, Y. PY - 2006 DA - 2006// TI - Relationship between gene expression and observed intensities in DNA microarrays-a modeling study JO - Nucleic Acids Research VL - 34 UR - https://doi.org/10.1093/nar/gkl122 DO - 10.1093/nar/gkl122 ID - Held2006 ER - TY - JOUR AU - Skvortsov, D. AU - Abdueva, D. AU - Christina, C. AU - Schaub, B. AU - Tavare, S. PY - 2007 DA - 2007// TI - Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays JO - Nucleic Acids Research VL - 35 UR - https://doi.org/10.1093/nar/gkm348 DO - 10.1093/nar/gkm348 ID - Skvortsov2007 ER - TY - JOUR AU - Cheng, C. AU - Li, L. M. PY - 2005 DA - 2005// TI - Sub-array normalization subject to differentiation JO - Nucleic Acids Research VL - 33 UR - https://doi.org/10.1093/nar/gki844 DO - 10.1093/nar/gki844 ID - Cheng2005 ER - TY - CHAP AU - Li, L. M. AU - Cheng, C. ED - Stafford, P. PY - 2008 DA - 2008// TI - Differentiation Detection in Microarray Normalization BT - DNA Microarray Normalization UR - https://doi.org/10.1201/9781420052794.ch2 DO - 10.1201/9781420052794.ch2 ID - Li2008 ER - TY - JOUR AU - Bolstad, B. AU - Irizarry, R. AU - Astrand, M. AU - Speed, T. PY - 2003 DA - 2003// TI - A comparison of normalization methods for high density oligonucleotide array data based on variance and bias JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/19.2.185 DO - 10.1093/bioinformatics/19.2.185 ID - Bolstad2003 ER - TY - JOUR AU - Dudoit, S. AU - Yang, Y. AU - Callow, M. AU - Speed, T. PY - 2002 DA - 2002// TI - Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments JO - Statistica Sinica VL - 12 ID - Dudoit2002 ER - TY - JOUR AU - Ge, H. AU - Cheng, C. AU - Li, L. PY - 2008 DA - 2008// TI - A probe-treatment-reference(PTR) model for the analysis of oligonucleotide expression microarrays JO - BMC bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-194 DO - 10.1186/1471-2105-9-194 ID - Ge2008 ER - TY - BOOK AU - Huber, P. AU - Wiley, J. PY - 1981 DA - 1981// TI - Robust statistics PB - Sons, Inc CY - New York UR - https://doi.org/10.1002/0471725250 DO - 10.1002/0471725250 ID - Huber1981 ER - TY - CHAP AU - Bolstad, B. PY - 2004 DA - 2004// TI - Low-level Analysis of High-density Oligonucleotide Array Data: Background, Normalization and Summarization BT - PhD thesis ID - Bolstad2004 ER - TY - JOUR AU - Both, S. K. AU - Muijsenberg, J. v. a. n. d. e. r. AU - van Blitterswijk, C. AU - de Boer, J. AU - de Bruijn, J. PY - 2007 DA - 2007// TI - A Rapid and Efficient Method for Expansion of Human Mesenchymal Stem Cells JO - Tissue Engineering VL - 13 UR - https://doi.org/10.1089/ten.2005.0513 DO - 10.1089/ten.2005.0513 ID - Both2007 ER - TY - JOUR AU - Tusher, V. G. AU - Tibshirani, R. AU - Chu, G. PY - 2001 DA - 2001// TI - Significance analysis of microarrays applied to the ionizing radiation response JO - Proceedings of the National Academy of Sciences VL - 98 UR - https://doi.org/10.1073/pnas.091062498 DO - 10.1073/pnas.091062498 ID - Tusher2001 ER - TY - JOUR AU - Irizarry, R. A. AU - Wu, Z. AU - Jaffee, H. PY - 2006 DA - 2006// TI - Comparison of Affymetrix GeneChip expression measures JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btk046 DO - 10.1093/bioinformatics/btk046 ID - Irizarry2006 ER -