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Table 1 Performance of contact area energy for native fold recognition on decoy sets

From: A pairwise residue contact area-based mean force potential for discrimination of native protein structure

Decoy set

Number of proteins

Average number of decoys per set (~)

Contact area energy

   

Rank 1

Z score

Pe

Misfold

23

1

23/23

n/a

n/a

4state_reduced

7

665

7/7

-7.0

-6.5

fisa

4

500

4/4

-0.8

-2

hg_structal

29

29

28/29*

-8.5

-3.4

ig_structal_hires

20

19

20/20

-18.7

-3

ig_structal

61

60

61/61

-31.1

-4.1

lmds

9

450

9/9

-17.0

-6.0

semfold

6

11300

5/6

-13.7

-9.3

vhp_mcmd

1

6255

1/1

-14.7

-8.7

DecoysForMMPBSA

12

30

12/12

-5.9

-3.4

HRDecoy

1215

995

1215/1215

-10.4

-6.9

Rosetta_Tsai

30

1862

0/30*

-0.2

-1.5

  1. • It is noticeable that 1gdm is obsolete and it is replaced by 2gdm in protein data bank.
  2. 2gdm is the first in energy ranking.