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Table 3 Van der Waals radii of atoms

From: A pairwise residue contact area-based mean force potential for discrimination of native protein structure

Atom

Radius Ã…

Atom

Radius Ã…

C

1.5

F**

2

C**

2

N

1.55

CA

2

ND1

1.55

CB

2

ND2

1.55

CD

2

NE

1.55

CD1

1.75

NE1

1.55

CD1

2

NE2

1.55

CD2

1.75

NH1

1.55

CD2

2

NH2

1.55

CE

2

NZ

1.55

CE1

1.75

O

1.4

CE2

1.75

O**

1.44

CE3

1.75

OD1

1.4

CG

1.75

OD2

1.4

CG

2

OE1

1.4

CG1

2

OE2

1.4

CG2

2

OG

1.4

CH2

1.75

OG1

1.4

CH3

2

OH

1.4

CZ

1.75

S**

2

CZ

2

SD

2

CZ2

1.75

SG

2

CZ3

1.75

  
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BMC Bioinformatics

ISSN: 1471-2105

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