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Figure 5 | BMC Bioinformatics

Figure 5

From: Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

Figure 5

Accuracy of a partition-free MEA method. The ability of different MEA method to correctly rank the known TF motif in 237 yeast ChIP-chip experiments is shown. Each bar shows the mean PRA of the given MEA method on all 237 ChIP-chip datasets. Error bars show standard error. The LR method is partition free. PASTAA uses X and Y constrained partition maximization with a maximum of 1000 sequences in the "positive" sets. All fixed-partition (YFP) methods use a threshold of t y = 0.001.

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