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Figure 1 | BMC Bioinformatics

Figure 1

From: GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms

Figure 1

Screenshot of the GeneMesh user interface. Red tabs along the right margin highlight input and output action links including: 1, pulldown for selecting limits on inclusion of genes into MeSH categories based on citation statistics; 2, the total number of GeneIDs associated with the given MeSH term; 3, the total number of HomoloGene IDs associated with the given MeSH term; 4, the number of genes from the input set that match genes associated with the indicated MeSH term (clicking on the number links to Entrez Gene summaries for each of the genes); 5, the hypergeometric probability of genes associated with a given MeSH category (clicking on the arrow sorts output MeSH categories in ascending or descending order based on the magnitude of the hypergeometric p value); 6, the B, M or C action links provide gene ontology information; 7, the K action link links to KEGG pathway diagrams for genes associated with a given MeSH category; 8, links to protein interaction information displayed in a dynamically interactive network (N) or links to protein interaction information displayed in a tabular format (T); and 9, the H action link display a Heat map of Z score-normalized hybridization intensity values for the set of genes associated with a given MeSH category.

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