Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates

Table 4 Chromosome-wise summary of repositioning done by LODE.

Chromosome	No. of SNPs tested	No. of SNPs assigned to same chromosome	No. of SNPs assigned a different chromosome	No. of SNPs not assigned
1	3635	3585	2	48
2	2774	2732	3	39
3	2612	2551	12	49
4	2517	2470	4	43
5	2260	2221	4	35
6	2597	2570	1	26
7	2244	2204	4	36
8	2378	2344	2	32
9	1993	1958	4	31
10	2281	2241	10	30
11	2389	2337	2	50
12	1677	1646	3	28
13	1909	1880	3	26
14	1771	1747	1	23
15	1808	1781	2	25
16	1654	1627	0	27
17	1661	1626	0	35
18	1474	1436	2	36
19	1577	1538	2	37
20	1616	1603	0	13
21	1377	1343	2	32
22	1313	1279	2	32
23	1258	1223	2	33
24	1339	1319	1	19
25	1087	1065	1	21
26	1062	1042	2	18
27	1014	969	1	44
28	1004	980	1	23
29	1070	1040	0	30
X	711	630	8	73
Total	54062	52987	81	994

ISSN: 1471-2105