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Table 2 Gene selection methods used in calculating percentage of overlapping genes

From: Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays

Selection method

Short name

Reference

T-statistic

TTest

Boulesteix and Slawski, 2009 [8]

Fold change

FC

Boulesteix and Slawski, 2009 [8]

Wilcoxon statistic

Wilcoxon

Boulesteix and Slawski, 2009 [8]

Welch T-statistic

WelchT

Boulesteix and Slawski, 2009 [8]

Bayesian t-statistic 1

BaldiLong

Baldi and Long, 2001 [9]

Bayesian t-statistic 2

FoxDimmic

Fox and Dimmic, 2006 [10]

Shrinkage t-statistic

ShrinkageT

Opgen-Rhein and Strimmer, 2007 [11]

Soft-threshold t-statistic

SoftthresholdT

Wu, 2005 [12]

Parametric empirical Bayes

Limma

Smyth, 2004 [13]

Nonparametric empirical Bayes

Ebam

Efron et al., 2001 [14]

Permutation test

Permutation

Â