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Table 2 Gene selection methods used in calculating percentage of overlapping genes

From: Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays

Selection method Short name Reference
T-statistic TTest Boulesteix and Slawski, 2009 [8]
Fold change FC Boulesteix and Slawski, 2009 [8]
Wilcoxon statistic Wilcoxon Boulesteix and Slawski, 2009 [8]
Welch T-statistic WelchT Boulesteix and Slawski, 2009 [8]
Bayesian t-statistic 1 BaldiLong Baldi and Long, 2001 [9]
Bayesian t-statistic 2 FoxDimmic Fox and Dimmic, 2006 [10]
Shrinkage t-statistic ShrinkageT Opgen-Rhein and Strimmer, 2007 [11]
Soft-threshold t-statistic SoftthresholdT Wu, 2005 [12]
Parametric empirical Bayes Limma Smyth, 2004 [13]
Nonparametric empirical Bayes Ebam Efron et al., 2001 [14]
Permutation test Permutation