Table 1 Representative members of the PDZ domain family used in this study.
From: Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Protein containing PDZ domain | PDB entry | Resolution (Å) | Source organism |
|---|---|---|---|
nNOS | 1qau | 1.25 | Rattus norvegicus |
InaD | 1ihj | 1.8 | Drosophila melanogaster |
PSD-95 (PDZ3) | 1bfe/1be9 | 2.3/1.82 | Rattus norvegicus |
tricorn protease | 1k32 | 2.0 | Thermoplasma acidophilum |
GRIP2 (PDZ4) | 1x5r | NMR structure | Homo sapiens |
Rv0983 | 1y8t | 2.0 | Mycobacterium tuberculosis h37rv |
PhotosystemII D1 Protease | 1fc6 | 1.8 | Scenedesmus obliquus |
Alpha-1 Syntrophin | 1qav | 1.9 | Mus musculus |
EpsC | 2i6v | 1.63 | Vibrio cholerae |
DVL2 | 2f0a | 1.8 | Xenopus laevis |