Table 4 Results for the same quantities shown in Table 3, except only for the 27 transmembrane helix pair structures that have at least 15 inter-helix residue contacts
From: Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Include homolog sequences? | Include depth-dependent score | Percentile rank of native sequence | Median Percentile Rank | ||
|---|---|---|---|---|---|
| Â | Â | 1% | 5% | 10% | Â |
No | No | 9 (33%) | 13 (48%) | 20 (74%) | 6.7% |
No | Yes | 9 (33%) | 15 (56%) | 20 (74%) | 3.6% |
Yes | No | 10 (37%) | 13 (48%) | 20 (74%) | 5.3% |
Yes | Yes | 11 (41%) | 16 (59%) | 22 (81%) | 2.3% |