Conditional random pattern model for copy number aberration detection

BMC Bioinformatics

Table 2 CNA detection results of CRP model on the simulated SNP arrays

SNR	Samples	sr	sp	rr	rp	hr	hp	f
5.00	NA10851	0.986	0.972	0.955	1.000	0.928	0.986	0.956
		0.983	0.969	0.955	1.000	0.925	0.983	0.953
	NA12812	0.987	0.961	0.909	1.000	0.874	0.987	0.927
		0.984	0.962	0.909	1.000	0.875	0.984	0.926
	NA18605	0.987	0.961	0.909	1.000	0.874	0.987	0.927
		0.982	0.959	0.955	1.000	0.915	0.982	0.947
2.00	NA10851	0.945	0.964	0.955	0.913	0.920	0.863	0.890
		0.925	0.944	0.909	0.833	0.858	0.771	0.812
	NA12812	0.971	0.919	0.909	0.952	0.835	0.925	0.878
		0.975	0.919	0.909	1.000	0.835	0.975	0.900
	NA18605	0.909	0.969	0.909	0.800	0.881	0.727	0.797
		0.919	0.942	0.909	0.840	0.857	0.772	0.812
1.25	NA10851	0.801	0.914	0.864	0.583	0.790	0.467	0.587
		0.771	0.858	0.864	0.639	0.741	0.493	0.592
	NA12812	0.814	0.808	0.773	0.633	0.625	0.516	0.565
		0.731	0.775	0.864	0.579	0.670	0.423	0.519
	NA18605	0.854	0.912	0.818	0.704	0.746	0.601	0.666
		0.717	0.644	0.591	0.517	0.380	0.371	0.376

Key: Seven metrics were used: snp-recall (sr), snp-precision (sp), region-recall (rr), region-precision (rp), hybrid-recall (hr), hybrid-precision (hp) and f-score (f).

ISSN: 1471-2105