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Figure 3 | BMC Bioinformatics

Figure 3

From: A model-independent approach to infer hierarchical codon substitution dynamics

Figure 3

Agglomeration progress. A dendrogram of the result of an agglomeration based on successively joining pairs of states or aggregates that result in the best aggregate with respect to the mutual information measure in Eq. 3. The dashed line marks the most significant aggregation, which is also shown in Figure 4. S1 denotes serine coded by TCT, TCC, TCA and TCG, and S2 denotes serine coded by AGT and AGC. Amino acids forming Riddle et al.'s minimum set capable of forming complex protein folds [41] are underlined.

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