Table 1 Single Amino-Acids Features Selection.
From: AMS 3.0: prediction of post-translational modifications
Accession number | Brief feature description | Reference | Selected/Rejected |
|---|---|---|---|
ARGP820101 | Hydrophobicity index | Eur. J. Biochem. 128, 565-575 (1982) | Rejected |
BIOV880101 | Information value for accessibility; average fraction 35% | Protein Engineering 2, 185-191 (1988) | Selected |
BIOV880102 | Information value for accessibility; average fraction 23% | Protein Engineering 2, 185-191 (1988) | Selected |
BLAS910101 | Scaled side chain hydrophobicity values | Analytical Biochemistry 193, 72-82 (1991) | Selected |
BLAS910101 | Scaled side chain hydrophobicity values | Analytical Biochemistry 193, 72-82 (1991) | Rejected |
BULH740101 | Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues | Arch. Biochem. Biophys. 161, 665-670 (1974) | Rejected |
FASG760101 | Molecular weight | Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976) | Rejected |
HOPA770101 | Hydration number | Intermolecular Interactions and Biomolecular Organizations, Wiley, New York (1977) | Selected |
KRIW710101 | Side chain interaction parameter | Biochim. Biophys. Acta 229, 368-383 (1971) | Selected |
KRIW790101 | Side chain interaction parameter | Biochim. Biophys. Acta 576, 204-228 (1979) | Selected |
KRIW790102 | Fraction of site occupied by water | Biochim. Biophys. Acta 576, 204-228 (1979) | Selected |
KRIW790103 | Side chain volume | Biochim. Biophys. Acta 576, 204-228 (1979) | Selected |
LAWE840101 | Transfer free energy, CHP/water | J. Biol. Chem. 259, 2910-2912 (1984) | Selected |
OOBM850105 | Optimized side chain interaction parameter | Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985) | Selected |
WARP780101 | Average interactions per side chain atom | J. Mol. Biol. 118, 289-304 (1978) (Gly 0.81) | Rejected |