PoGO: Prediction of Gene Ontology terms for fungal proteins

BMC Bioinformatics

Table 1 Performance comparison of the base and meta classifiers.

Classifier		Sensitivity	Specificity	F-Measure
Base Classifiers	InterPro	0.1893	0.9682	0.2456
	BLAST	0.0251	0.8547	0.0471
	Biochemical properties	0.0099	0.9213	0.0173
	Protein Structure	0.0795	0.9599	0.1304
Meta-classifiers	Naïve Bayes/Unbalanced	0.2620	0.9982	0.3355
	Naïve Bayes/Balanced	0.0629	0.9358	0.1140
	SVM/Unbalanced	0.0011	0.9273	0.0022
	SVM/Balanced	0.0462	0.3696	0.0052

Performance represents an average of all classifiers trained with each data set and is measured by 10-fold cross validation.

ISSN: 1471-2105