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Table 4 Summary statistics and performance evaluation of the taxon-specific classifiers.

From: PoGO: Prediction of Gene Ontology terms for fungal proteins

Dataset

Proteins

InterPro terms

GO terms

Sensitivity

Specificity

F-measure

UniProt

119016

8414

2826

0.1149

0.9976

0.0893

Fungi

7093

3331

459

0.2680

0.9745

0.3101

Fungi-expanded

70205

5438

1390

0.2304

0.9875

0.2611

Bacteria

3282

2255

115

0.5693

0.9786

0.5691

Viridiplantae

5669

2087

285

0.3808

0.9840

0.3789

Vertebrata

16079

1706

1232

0.0939

0.9555

0.1446

  1. Performance comparison of the InterPro base-classifier on taxon-specific and the UniProt training datasets. No F-measure threshold was applied while computing the performance metrics.