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Table 3 IMGT/LIGMotif reference motif databases.

From: From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT® standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences

   

Number of sequences

  

Prototype

Number of databases

Reference motif databases

Human

Mouse

Gene identification (Blast HSPs)

Gene description and functionality identification

V-GENE

16

L-V-GENE-UNIT

368

204

+

 
  

V-GENE-UNIT

385

221

+

 
  

L-PART1

534

550

+

 
  

V-INTRON

575

518

+

 
  

L-INTRON-L

470

288

+

 
  

V-EXON

660

550

+

+

  

L-PART2

591

580

+

 
  

V-REGION

887

1036

+

 
  

FR1-IMGT

785

730

+

 
  

CDR1-IMGT

790

731

+

 
  

FR2-IMGT

790

739

+

 
  

CDR2-IMGT

788

737

+

 
  

FR3-IMGT

788

737

+

 
  

CDR3-IMGT

674

607

+

 
  

V-RS

378

222

+

 
  

V-SPACER

485

449

+

 
 

2

V-HEPTAMER

326

317

 

+

  

V-NONAMER

262

298

 

+

D-GENE

6

D-GENE-UNIT

36

28

+

 
  

5'D-RS

40

29

+

 
  

5'D-SPACER

50

29

+

 
  

D-REGION

50

38

+

 
  

3'D-RS

36

32

+

 
  

3'D-SPACER

47

32

+

 
 

4

5'D-NONAMER

36

22

 

+

  

5'D-HEPTAMER

36

22

 

+

  

3'D-HEPTAMER

36

21

 

+

  

3'D-NONAMER

33

21

 

+

J-GENE

4

J-GENE-UNIT

120

107

+

 
  

J-RS

120

107

+

 
  

J-SPACER

120

108

+

 
  

J-REGION

130

121

+

 
 

2

J-NONAMER

101

76

 

+

  

J-HEPTAMER

101

77

 

+