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Figure 1 | BMC Bioinformatics

Figure 1

From: Odefy - From discrete to continuous models

Figure 1

Odefy overview. Odefy generates models from sets of Boolean equations or Boolean hypergraphs created with yEd. Alternatively, Boolean models can be imported from the CellNetAnalyzer, GINsim or the PBN toolbox. Odefy contains a method for the automatic generation of multi-compartment models from a given single cell model. Boolean models can be exported to other discrete input formats (for the GNA and SQUAD toolboxes), used for Boolean simulations and analysis within Odefy, or they can be converted to systems of ordinary differential equation (ODE). These ODE systems can either be directly simulated and analyzed with Odefy or exported to well-established model formats, including MATLAB script files, SBML, SB Toolbox models and R script files.

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