Table 1 Effect of the chain-net approach on the translated BLAT alignments
From: eHive: An Artificial Intelligence workflow system for genomic analysis
Alignment | Chain&Net | Alignments | Genomic Coverage | Coding Exon Coverage | ||
|---|---|---|---|---|---|---|
Human-Chicken | NO | 894342 | 39885438 | 1.09% | 20286249 | 49.55% |
Human-Chicken | YES | 337551 | 39928606 | 1.09% | 20024694 | 48.91% |
Human-C.savignyi | NO | 142111 | 6039918 | 0.16% | 4227643 | 10.33% |
Human-C.savignyi | YES | 54447 | 5720330 | 0.16% | 4052706 | 9.90% |
Mouse-Tetraodon | NO | 509589 | 20480760 | 0.75% | 14931981 | 42.29% |
Mouse-Tetraodon | YES | 177447 | 19615452 | 0.72% | 14450833 | 40.93% |
Mouse-Xenopus | NO | 2061217 | 29538379 | 1.09% | 18769694 | 53.16% |
Mouse-Xenopus | YES | 239083 | 27926452 | 1.03% | 18113364 | 51.30% |