Table 4 Jobs in the GeneTree pipeline for Ensembl release 49

GenomeDumpFasta

39

-

1 per genome

GenomeLoadMembers

39

-

1 per genome

GenomeSubmitPep

39

-

1 per genome

CreateBlastRules

39

-

1 per genome

SubmitPep_*

682412

-

1 per peptide

blast_*

26614068

-

All vs all peptides

UpdatePAFids

1

-

1 per pipeline

PAFCluster

1

-

1 per pipeline

Muscle

26484

7

1 per genetree

BreakPAFCluster

95

-

As many as required

TreeBeST

26477

9

1 per genetree

OrthoTree

26468

-

1 per genetree

CreateHomology_dNdSJob

1

-

1 per pipeline

Homology_dNdS

3646340

1364

1 per orthologous gene pair

Threshold_on_dS

1

-

1 per pipeline

TOTAL

31022503

1380