Table 2 Mapping the known conformers taken from crystal structures to the pocket shape clusters.
protein | pdb code | ligand | cluster ID | Â |
|---|---|---|---|---|
MMP-1 | 966C | RS2 | 7 | Â |
| Â | 2TCL | RO4 | 9 | Â |
| Â | 1CGL | PHQ | Â | Â |
| Â | 1HFC | PLH | Â | Â |
| Â | 1CGF | apo | Â | Â |
| Â | 1CGE | apo | Â | Â |
| Â | 2J0T | apo | Â | Â |
protein | pdb code | ligand | cluster ID1 | cluster ID2 |
MMP-13 | 1XUC | PB3 | 5 | 6 |
| Â | 1XUD | PB4 | Â | Â |
| Â | 1XUR | PB5 | Â | Â |
| Â | 2OW9 | SP6 | 6 | Â |
| Â | 1ZTQ | O33 | 3 | Â |
| Â | 830C | RS1 | Â | Â |
| Â | 2E2D | apo | 4 | Â |