Skip to main content

Table 1 Significantly associated regions detected by CNstream and PennCNV

From: CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays

REGIONS CHROM BASEPAIR DELS CASES DELS CONTROLS OR
    N % n %  
CNSTREAM SIGNIFICANT SEGMENTS
8p22 8 15435527..15453141 24 7.2 4 2.6 2.9
  8 15439515..15455979 33 9.9 5 3.3 3.2
  8 15447669..15464497 33 9.9 5 3.3 3.2
  8 15450330..15467035 24 7.2 4 2.6 2.9
19p12 19 20368239..20449621 51 15.2 11 7.2 2.3
  19 20385941..20473895 54 16.1 11 7.2 2.5
  19 20423788..20520617 54 16.1 11 7.2 2.5
  19 20439390..20522325 40 11.9 5 3.3 4
PENNCNV SIGNIFICANT PROBES
8q24.3 8 145079175 30 9.0 0 0.0 Inf
  8 145083192 30 9.0 0 0.0 Inf
  8 145083193 29 8.7 0 0.0 Inf
  8 145090342 29 8.7 0 0.0 Inf
11p15.5 11 1073364 16 4.8 2 1.3 3.8
  11 1074362 16 4.8 2 1.3 3.8
  11 1074363 15 4.5 2 1.3 3.5
  11 1086494 15 4.5 2 1.3 3.5
19p13.3 19 4020119 15 4.5 1 0.7 7.1
  19 4028096 15 4.5 1 0.7 7.1
  19 4037807 15 4.5 1 0.7 7.1
  19 4041113 15 4.5 1 0.7 7.1
  1. Number and percentage of cases and controls in each of the associated CNP regions detected by CNstream and PennCNV. In bold, the candidate regions chosen for quantitative PCR validation.