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Table 3 Comparison in the number of calls between CNstream and PennCNV

From: CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays

SAMPLE

CNV events

from Kidd et al.

PENNCNV

CNSTREAM

CBS

Events detected by Cnstream and PennCNV

NA19240

405

26

17

8

16

NA19129

339

18

21

7

15

NA18956

307

18

19

15

10

NA18555

383

13

10

12

4

NA18517

100

16

15

4

8

NA18507

174

21

22

9

14

NA12878

351

35

26

16

15

NA12156

305

18

15

12

10

TOTAL

2364

165

145

83

92

  1. Number of CNV events detected by each algorithm for each of the eight Hapmap reference samples. Number of events detected simultaneously by CNstream and PennCNV is provided in the last column.