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Table 3 Comparison in the number of calls between CNstream and PennCNV

From: CNstream: A method for the identification and genotyping of copy number polymorphisms using Illumina microarrays

SAMPLE CNV events
from Kidd et al.
PENNCNV CNSTREAM CBS Events detected by Cnstream and PennCNV
NA19240 405 26 17 8 16
NA19129 339 18 21 7 15
NA18956 307 18 19 15 10
NA18555 383 13 10 12 4
NA18517 100 16 15 4 8
NA18507 174 21 22 9 14
NA12878 351 35 26 16 15
NA12156 305 18 15 12 10
TOTAL 2364 165 145 83 92
  1. Number of CNV events detected by each algorithm for each of the eight Hapmap reference samples. Number of events detected simultaneously by CNstream and PennCNV is provided in the last column.