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Figure 1 | BMC Bioinformatics

Figure 1

From: A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes

Figure 1

The pipeline for over-representation evaluation of TF binding sites. (a) and (b) TF binding sites were described with the matrices in Jaspar Database; (c) experiments with modified TF activity were selected from the ArrayExpress Database and (d) analyzed with computational methods for differentially expressed genes; (e) and (f) over-represented motifs or matrices were predicted using Weeder and oPOSSUM and those motifs (h) or matrices (g) were compared with the target matrices to check whether the binding sites of affected TFs were recovered.

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BMC Bioinformatics

ISSN: 1471-2105

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