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Table 1 Transcription factors and their Jaspar target matrices.

From: A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes

Experiment Name

TF Name

JasparClass

Jaspartarget matrices

E-GEOD-10954

cMyc

bHLH-ZIP

MYC-MAX, MAX, Mycn

E-GEOD-11039

e2f2

E2F_TDP

E2F1

E-GEOD-11352

ESRalpha

Nuclear Receptor

ESR1

E-GEOD-11809

irf1

TRP-CLUSTER

IRF1 IRF2

E-GEOD-2060

CREB

bZIP

CREB1, bZIP910, bZIP911

E-GEOD-2192

PPARg2

Nuclear Receptor

PPARG-RXRA, PPARG

E-GEOD-2527

Gata-1

ZN-FINGER, GATA

Gata1

E-GEOD-3126

HNF4a

NUCLEAR RECEPTOR

HNF4A

E-GEOD-3244

p53

TP53

P53

E-GEOD-6077

nmyc

bHLH-ZIP

Mycn, MYC-MAX, MAX

E-GEOD-6487

Myf

bHLH

Myf

E-GEOD-7137

KLF15

ZN-FINGER, C2H2

Klf4

E-GEOD-7219

NFkappaB2

REL

NF-kappaB, NFKB1

E-GEOD-7223

AIbZIP

bZIP

CREB1, bZIP910, bZIP911

E-GEOD-7835

HiF1

bHLH

Arnt, Arnt-Ahr

E-GEOD-9786

PPARalpha

Nuclear Receptor

PPARG, PPARG-RXRA

E-MEXP-1444

Cepba

bZIP

Cebpa, Ddit3-Cebpa

E-MEXP-634

Gata-3

ZN-FINGER, GATA

GATA3

E-GEOD-590

USF1

Zipper

USF1

E-GEOD-5800

Irf6

TRP-CLUSTER

IRF1 IRF2

E-GEOD-5823

c-MYC

bHLH-ZIP

Mycn, MYC-MAX, MAX

E-GEOD-2624

NF-kB

REL

NF-kappaB, NFKB1

E-GEOD-3116

HNF4

NUCLEAR RECEPTOR

HNF4A

E-GEOD-5424

Foxa2

Forkhead

FOXF2, FOXD1, FOXC1, FOXL1, Foxq1, Foxd3, Foxa2, FOXI1

E-GEOD-8943

FOXQ1

Forkhead

FOXF2, FOXD1, FOXC1, FOXL1, Foxq1, Foxd3, Foxa2, FOXI1

E-GEOD-11557

Evi-1

zinc finger

Evi1

E-TABM-43

TP53

TP53

P53

E-GEOD-2815

Myb

Helix-Turn-Helix

Myb

E-GEOD-5475

PPARI

Nuclear Receptor

PPARG, PPARG-RXRA

E-GEOD-6846

STAT2

stat

STAT1

E-GEOD-11836

Nkx3.1

HOMEO

Nkx2-5

E-MEXP-871

HMGA2

-

HMG-1, HMG-IY

E-MEXP-1413

E2F2

E2F TDP

E2F1